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DeepPE: Computational models that find
prime editing candidate target sequences and
predict PE2 efficiencies at the target sequences
When a target sequence is entered, this web tool provides the expected PE2 efficiencies for a total of 57 pegRNAs
(24 pegRNAs from DeepPE, 23 pegRNAs from PE_type, and 10 pegRNAs from PE_position)
Enter FASTA text
Enter target sequences in FASTA format
*(sequence length >= 47).
Upload a FASTA file
Upload a
.zip
file which contains single
.fasta
or
.fa
file
*(sequence length >= 47)
:
[View an example input]
>LINC00478 (Chr21:17,959,604-17,960,104)
CAGACAGCATTAGAGTTGGCTTGAGAATTGCCGTACTTTGCTTCCCTTTGTATGTATTTC
TTGTATGCTGCCGAGTCACTGATGGCTAGCTCTGTCTGGCAAGTAATTCAAAAATGCTGT
TTATGTAGAAAGGAAAGGTAGGGACTTTACCACACTCTGTCATTAAAGGGAGCAATTGAA
GAACAAAGGAACTGAGTAAATACCTATATATTGCCTTTTGTGTTGCGAAACACTGTAGCA
CAAACACATTTGTGTTCAGCCAAATGTTTTACTTCCTTTTGTAATAACGCATATAGTAGG
TTGTCTCCACATATGTACAAGAATCCATATTTTATTTAAACGTATATAGTCAATTGTTCA
TATTTATAGGCTGCAAACATTTCTCAATCTCAAAGACTTTTACATATCCACTCCCACACA
GCTATTTGTTATTATTTTAAAAGTTCTTAAATTAAAAAAAAAAATAAAATATACTAATAT
CTCTGTTGGTTGATTTTATTA
[Download an example input]