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DeepBE
The computational models shown here (i.e., DeepBE and DeepCas9variants) were generated based on the measured activities of these base editors and Cas9 variants when HEK293T cells were transduced with a lentiviral vector that expresses a base editor or Cas9 variant at a multiplicity of infection of 0.15, so that almost every transduced cell had only one copy of the Cas9 or base editor variant-encoding sequence. Western blotting showed that the levels of most,
but not all
, Cas9 and base editor variant proteins were comparable. For more information,
click here
.
Select mode
Single base editor and sgRNA mode
Comparison mode
Select the deamination domain
ABE8e(V106W)
ABE8.17m+V106W
YE1-BE4max
SsAPOBEC3B
CGBE1
miniCGBE1
APOBEC-nCas9-Ung
Select the Cas9 nickase domain
SpCas9
VRQR variant
SpCas9-NG
SpCas9-NRRH
SpCas9-NRTH
SpCas9-NRCH
SpG
SpRY
Sc++
Enter target sequence
Enter target sequence
*(sequence length >= 30).
ENTER
Select guide sequence
Select..
Select model
DeepCas9variants
DeepBE-ABE
DeepBE-CBE
DeepBE-CGBE
Enter FASTA text
Enter target sequences in FASTA format
*(sequence length >= 30).
Upload a FASTA file
Upload a
.zip
file which contains single
.fasta
or
.fa
file.
[View an example input 1]
>LINC00478 (Chr21:17,959,604-17,960,044)
CAGACAGCATTAGAGTTGGCTTGAGAATTGCCGTACTTTGCTTCCCTTTGTATGTATTTC
[View an example input 2]
>LINC00478 (Chr21:17,959,604-17,960,104)
CAGACAGCATTAGAGTTGGCTTGAGAATTGCCGTACTTTGCTTCCCTTTGTATGTATTTC
TTGTATGCTGCCGAGTCACTGATGGCTAGCTCTGTCTGGCAAGTAATTCAAAAATGCTGT
TTATGTAGAAAGGAAAGGTAGGGACTTTACCACACTCTGTCATTAAAGGGAGCAATTGAA
GAACAAAGGAACTGAGTAAATACCTATATATTGCCTTTTGTGTTGCGAAACACTGTAGCA
CAAACACATTTGTGTTCAGCCAAATGTTTTACTTCCTTTTGTAATAACGCATATAGTAGG
TTGTCTCCACATATGTACAAGAATCCATATTTTATTTAAACGTATATAGTCAATTGTTCA
TATTTATAGGCTGCAAACATTTCTCAATCTCAAAGACTTTTACATATCCACTCCCACACA
GCTATTTGTTATTATTTTAAAAGTTCTTAAATTAAAAAAAAAAATAAAATATACTAATAT
CTCTGTTGGTTGATTTTATTA
[Download an example input]